1. An apparatus for identifying a single biomolecule, comprising:
a substrate having a light detector; and
a linker site formed over the light detector, the linker site being treated to affix the biomolecule to the linker site;
wherein the linker site is proximate to the light detector and is spaced apart from the light detector by a distance of less than or equal to 100 micrometers.
2. The apparatus of claim 1, further comprising a blind sheet formed over the substrate, the blind sheet including a pinhole having a diameter, wherein the linker site is formed proximate to the pinhole.
6. The apparatus of claim 2, further comprising a microlens formed between the substrate and the blind sheet.
7. The apparatus of claim 1, wherein the distance is less than or equal to 25 micrometers.
10. An optical detection system, comprising at least 10,000 apparatuses as recited in claim 1.
11. A method of sequencing a plurality of nucleic acid molecules, the method comprising the steps of:
affixing a plurality of nucleic acid molecules to the linker sites of the optical detection system of claim 10; and
performing nucleic acid sequencing of the nucleic acid molecules in parallel on the optical detection system.
12. A method of detecting a plurality of biomolecules, the method comprising the steps of:
affixing a plurality of biomolecules to the linker sites of the optical detection system of claim 10; and
detecting the biomolecules on the optical detection system in parallel.
13. An optical detection system, comprising at least 250,000 apparatuses as recited in claim 1.
14. An optical detection system, comprising at least 2,000,000 apparatuses as recited in claim 1.
15. An optical detection system, comprising at least 10,000,000 apparatuses as recited in claim 1.
16. A method of sequencing a nucleic acid, comprising the steps of:
affixing one nucleic acid molecule to the linker site of the apparatus of claim 1; and
performing nucleic acid sequencing of the nucleic acid molecule on the apparatus.
17. The method of claim 16, wherein the nucleic acid is affixed to the linker site by binding to a polymerase molecule affixed to the linker site.
18. The method of claim 16, wherein the nucleic acid sequencing comprises the step of adding labeled nucleotides to the apparatus.
19. The method of claim 18, wherein the nucleotides are labeled fluorescently.
20. The method of claim 19, wherein the nucleotides are labeled fluorescently on their terminal phosphate.
21. The method of claim 16, wherein the nucleic acid sequencing is base extension sequencing and includes the step of adding blocked and labeled nucleotides to the apparatus.
22. The method of claim 21, wherein the nucleotides are labeled fluorescently.
24. The method of claim 22, wherein the nucleotides have distinct fluorescent labels and are added simultaneously.
27. The method of claim 16, wherein the sequence of the nucleic acid is unknown.
28. The method of claim 16, wherein the nucleic acid is detected with a label excited by Förster resonance energy transfer (FRET).
29. The method of claim 16, wherein the nucleic acid is detected with a label by time-resolved fluorescence technology.
30. A method of detecting a biomolecule, comprising the steps of:
affixing one or more biomolecule to the linker site of the apparatus of claim 1; and
detecting the biomolecule on the apparatus.
31. The method of claim 30, wherein the biomolecule comprises a label.
32. The method of claim 31, wherein the label is fluorescent.
33. The method of claim 32, wherein the biomolecule comprises a moiety chosen from a polypeptide, antibody, lipid, vitamin, low molecular weight organic molecule, and polysaccharide.
34. The method of claim 33, wherein the biomolecule is affixed to the linker site of the apparatus by a linking molecule.
35. The method of claim 34, wherein the linking molecule comprises a capture molecule.
36. The method of claim 35, wherein the capture molecule is a protein.
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1. An apparatus for identifying a single biomolecule, comprising:
a substrate having a light detector; and
a linker site formed over the light detector, the linker site being treated to affix the biomolecule to the linker site;
wherein the linker site is proximate to the light detector and is spaced apart from the light detector by a distance of less than or equal to 100 micrometers.
2. The apparatus of claim 1, further comprising a blind sheet formed over the substrate, the blind sheet including a pinhole having a diameter, wherein the linker site is formed proximate to the pinhole.
3. The apparatus of claim 2, wherein the pinhole has a diameter of less than or equal to 1,000 nanometers.
4. The apparatus of claim 2, wherein the pinhole has a diameter of less than or equal to 200 nanometers.
5. The apparatus of claim 2, further comprising a filter layer formed between the substrate and the blind sheet.
6. The apparatus of claim 2, further comprising a microlens formed between the substrate and the blind sheet.
9. The apparatus of claim 1, wherein the light detector collects light from the biomolecule within a solid angle, the solid angle being greater than or equal to 0.8 SI steridian.
43. A method of providing biomolecule analysis service, comprising the steps of:
providing a sample comprising a biomolecule from a service requester to a service provider;
the service requester receiving analytical results from the service provider, wherein the results are produced using the apparatus of claim 1.
44. The method of claim 43, wherein the method is performed for remunerative consideration.
45. The method of claim 44, wherein the service requester and the service provider are mediated by a vendor.
46. The method of claim 43, wherein the analytical results are produced in another country.
47. The method of claim 43, wherein the analytical results are produced in a country other than the United States of America.
48. An apparatus for identifying a single biomolecule, comprising:
a substrate having a light detector;
a linker site formed over the light detector, the linker site being treated to affix the biomolecule to the linker site; and
an excitation light source formed over the substrate;
wherein the linker site is proximate to the light detector and is spaced apart from the light detector by a distance of less than or equal to 100 micrometers.
49. The apparatus of claim 48, wherein the excitation light source includes a light emitting layer, the light emitting layer emitting excitation light to the linker site along a horizontal direction parallel to a surface of the light detector.
50. The apparatus of claim 49, further comprising a filter layer formed between the substrate and the light emitting layer.
51. The apparatus of claim 48, wherein the excitation light source is chosen from a light emitting diode (LED), an organic light emitting diode (OLED), a polymer light emitting diode (PLED), and a laser diode (LD).
52. The apparatus of claim 48, wherein the excitation light source provides excitation light of a first wavelength range not overlapping with a second wavelength range of light emitted from the biomolecule.
53. An apparatus for identifying a single biomolecule, comprising:
a substrate having a light detector; and
a linker site formed over the light detector, the linker site being treated to affix the biomolecule to the linker site;
wherein the light detector collects light emitted from the biomolecule within a solid angle of greater than or equal to 0.8 SI steridian.
54. An apparatus for identifying a single biomolecule, comprising:
a substrate having a light detector;
a linker site formed over the light detector, the linker site being treated to affix the biomolecule to it; and
an excitation light source formed over the substrate;
wherein the light detector collects light emitted from the biomolecule within a solid angle of greater than or equal to 0.8 SI steridian.
55. A method for manufacturing an apparatus for identifying a single biomolecule, comprising:
forming a light detector and a control circuit on a substrate;
forming a blind sheet having a pinhole over the substrate; and
forming a linker site over the light detector and proximate to the pinhole, the linker site being treated to affix the biomolecule to the linker site, wherein the linker site is proximate to the light detector and is spaced apart from the light detector by a distance of less than or equal to 100 micrometers.
56. The method of claim 55, further comprising forming a filter layer between the substrate and the blind sheet.
57. The method of claim 56, wherein forming the blind sheet comprises:
forming an opaque layer on the filter layer;
forming a photoresist layer on the opaque layer;
patterning the photoresist layer to expose a portion of the opaque layer;
etching the opaque layer using the patterned photoresist layer as a mask until the filter layer is exposed; and
removing the photoresist layer.
58. The method of claim 57, wherein the opaque layer comprises metal.
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Top Stories of 2023: #8 to #10
By Donald Zuhn –-
After reflecting upon the events of the past twelve months, Patent Docs presents its 17th annual list of top patent stories. For 2023, we identified ten stories that were covered on Patent Docs last year that we believe had (or are likely to have) a significant impact on patent practitioners and applicants. Today, we count down stories #10 to #8, and later this week we will count down the remaining top stories of 2023. As with our other lists (2022, 2021, 2020, 2019, 2018, 2017, 2016, 2015, 2014, 2013, 2012, 2011, 2010, 2009, 2008, and 2007), links to our coverage of these stories (as well as a few links to articles on related topics) have been provided in case you missed the articles the first time around or wish to go back and have another look. As always, we love to hear from Patent Docs readers, so if you think we left something off the list or disagree with anything we included, please let us know. In addition, we will be offering a live webinar on the "Top Patent Law Stories of 2023" on January 23, 2024 from 10:00 am to 11:15 am (CT). Details regarding the webinar, which will focus on a few of the most important stories on this year's list, can be found here.
10. Debate on Expansion of COVID Waiver Continues; WHO Releases Draft Agreement on Pandemic Prevention, Preparedness, and Response
The year began with the World Health Organization (WHO) releasing a draft agreement on pandemic prevention, preparedness, and response in February for consideration by the Intergovernmental Negotiating Body (INB), which is comprised of the 194 Member States of the WHO, and which was established in December 2021 at a special session of the WHO's World Health Assembly to draft and negotiate an agreement to strengthen global pandemic prevention, preparedness, and response. The draft includes a 49-clause preamble, with at least ten of the clauses concerning intellectual property. The agreement is expected to be agreed upon by the World Health Assembly in 2024.
And the year ended with the International Trade Commission (ITC) issuing a Report, in response to a request by the U.S. Trade Representative, Ambassador Katherine Tai, in anticipation of negotiations over expansion of the World Trade Organization (WTO) IP waiver that applies to COVID-19 vaccines (but not yet to COVID-19 diagnostics and therapeutic drugs). The mandate from the Trade Representative was that the ITC Report be a product of market and other research within the Commission's expertise and also reflect the views of stakeholders and the public, and that the Report would not have as a goal to "draw any policy conclusions." Despite not drawing any policy conclusions, however, the ITC Report has renewed discussions in some quarters over expansion of the COVID-19 waiver, the deadline of which was extended indefinitely in December 2022 (see "Nine Countries Seek Extension of WTO Waiver to COVID-19 Therapeutics and Diagnostics" and "Top Four Stories of 2022").
For information regarding this and other related topics, please see:
• "International Trade Commission Issues Report of COVID-19 IP Waiver," November 8, 2023
• ""Zero Draft" of WHO CA+ Released," February 7, 2023
9. Supreme Court Declines to Hear Teva Pharmaceuticals v. GlaxoSmithKline
In May, the Supreme Court declined to grant certiorari in Teva Pharmaceuticals USA v. GlaxoSmithKline LLC, disregarding the views of the Solicitor General regarding whether to grant cert. Perhaps the Justices felt that the Federal Circuit's backtracking in its second panel decision on the breadth of infringement inducement set forth in its first decision, in light of then Chief Judge Prost's strong dissent and the firestorm of protest (public and through amicus briefing regarding Teva's petition for rehearing), was enough to cabin the decision to the somewhat unique facts in the case. The petition for cert. involved the Federal Circuit's decisions in GlaxoSmithKline LLC v. Teva Pharmaceuticals USA, Inc. (Fed. Cir. 2020) and GlaxoSmithKline LLC v. Teva Pharmaceuticals USA (Fed. Cir. 2021), in both of which former Chief Judge Prost issued strong dissents, and which concerned whether a generic applicant filing a "skinny label" ANDA could properly be found liable for inducing infringement under 35 U.S.C. § 271(b). The Court issued an Order to the Solicitor General soliciting the government's views and that brief advocated that the Court grant cert.
For information regarding this and other related topics, please see:
• "H. Lundbeck A/S v. Lupin Ltd. (Fed. Cir. 2023)*," December 18, 2023
• "Solicitor General Files Brief Advocating Certiorari Grant in Teva Pharmaceuticals v. GlaxoSmithKline; Court Declines Invitation," May 15, 2023
8. Patent Law under Attack (Again)
The New York Times is (in)famous in this space for its attacks on the patent system (see "Top Stories of 2022: #8 to #10"; #9. New York Times Reopens Attack on U.S. Patent System). And last year at this time, the Times was at it again in a front page piece on Humira, a drug used for a variety of ailments that has brought relief to millions of patients who otherwise suffered with earlier, less effective drugs. The "problem" seems to be that Humira has made a pharma company a lot of money (purportedly $116 billion), that the drug is expensive (said to cost upwards of $50,000/year) and that the drug company has amassed a large number of patents to protect its intellectual property. But as we noted in response to the Times article, the bigger problem is that the Times failed to recognize several important facts relating to the circumstances under which Humira's makers made this money and amassed its patent estate (or "thicket" as the anti-patent crowd likes to call it).
In May, the U.S. Senate's Health, Education, Labor & Pensions (HELP) Committee passed out of committee five bills that attempted to address high drug prices: the Ensuring Timely Access to Generics Act of 2023 (S. 1067); the Expanding Access to Low-Cost Generics Act of 2023 (S. 1114); the Retaining Access and Restoring Exclusivity Act (S. 1214); and the Increasing Transparency in Generic Drug Applications Act (S. 775). And in September, a letter from 25 scholars, former judges, and former government officials sent to the Senate Health, Education, Labor and Pensions Committee, the Chair and Ranking Member of the House Ways and Means Committee, and the Secretary of Health and Human Services, Xavier Becerra, intended to "correct[] false claims that the federal government can use [the "march-in rights" provisions of] the Bayh-Dole Act . . . to impose price controls on prescription drugs."
Attacks on the patent system are not confined to an asserted impact of patents on drug pricing, however. Some attacking the patent system are also opposed to software patents, with such opposition seemingly being based on one or more of the false assumptions that all software patents are too broad, that it is obvious to invent software based processes, programming is an administrative activity that does not warrant patent protection, or that the patent system should not protect non-physical inventions. As we noted in July, none of these positions have any legal or technical credibility.
For information regarding this and other related topics, please see:
• "Patent Luminaries Try to Set Congress Straight on Drug Price Controls," September 26, 2023
• "FTC Announces Efforts to Police Pharmaceutical Companies' Patent Behavior," September 19, 2023
• "Drugs May Cost Too Much, But Patents Are Not the Cause," July 18, 2023
• "You Are Going to Hear A Lot More FUD about Patent Law, So Here Are Some Facts," July 5, 2023
• "Senate Once Again Tries to Address Drug Pricing," May 16, 2023
• "The New York Times Is at It Again Regarding Patents," January 29, 2023
Posted at 10:36 PM in International IP, Media Commentary, Supreme Court | Permalink | Comments (0)